Function reference • tidyFlowCore

All functions

arrange(<flowFrame>): Order rows using column values

arrange(<flowSet>): Order rows using column values

as_flowFrame(): Coerce an object into a flowFrame

as_flowSet(): Coerce an object into a flowSet

as_tof_tbl(): Coerce flowFrames or flowSets into tibbles.

as_tof_tbl(<flowSet>): Convert an object into a tibble-flowCore abstraction (a `tof_tbl`)

count(<flowFrame>): Count the observations in each group.

count(<flowSet>): Count the observations in each group.

filter(<flowFrame>): Keep rows that match a condition.

filter(<flowSet>): Keep rows that match a condition.

ggplot(<flowFrame>): Create a new ggplot.

ggplot(<flowSet>): Create a new ggplot.

group_by(<flowFrame>): Group a flowFrame into a flowSet using one or more variables.

make_flowcore_annotated_data_frame(): Make the AnnotatedDataFrame needed for the flowFrame class

metal_masterlist: A character vector of CyTOF metal name patterns supported by tidyFlowCore

mutate(<flowFrame>): Create, modify, and delete columns.

mutate(<flowSet>): Create, modify, and delete columns.

nest(<flowFrame>): Nest a flowFrame into a flowSet

new_tof_tibble(): Constructor for a tof_tibble.

pull(<flowFrame>): Extract a single column.

pull(<flowSet>): Extract a single column.

rename(<flowFrame>): Rename columns in a flowFrame

rename(<flowSet>): Rename columns in a flowSet

rename_with(<flowFrame>): Rename columns in a flowFrame

rename_with(<flowSet>): Rename columns in a flowSet

select(<flowFrame>): Keep or drop columns using their names and types.

select(<flowSet>): Keep or drop columns using their names and types.

simulate_cytometry_data(): Simulate Cytometry Data for FlowSet and FlowFrame Analysis

slice(<flowFrame>): Subset rows using their positions

slice(<flowSet>): Subset rows using their positions

slice_head(<flowFrame>): Subset rows at the head of a data structure.

slice_head(<flowSet>): Subset rows at the head of a data structure.

slice_max(<flowFrame>): Subset rows of a data structure in order.

slice_max(<flowSet>): Subset rows of a data structure in order.

slice_min(<flowFrame>): Subset rows of a data structure in order.

slice_min(<flowSet>): Subset rows of a data structure in order.

slice_sample(<flowFrame>): Subset rows randomly

slice_sample(<flowSet>): Subset rows randomly

slice_tail(<flowFrame>): Subset rows at the tail of a data structure.

slice_tail(<flowSet>): Subset rows at the tail of a data structure.

summarise(<flowFrame>): Summarize a flowFrame.

summarise(<flowSet>): Summarize a flowSet.

summarize(<flowFrame>): Summarize a flowFrame.

summarize(<flowSet>): Summarize a flowSet.

tof_find_panel_info(): Use tidyFlowCore's opinionated heuristic for extracting a high-dimensional cytometry panel's channel-antigen pairs from a flowFrame (read from a .fcs file.)

tof_get_panel(): Get panel information from a tof_tibble

tof_set_panel(): Set panel information from a tof_tbl

transmute(<flowFrame>): Create, modify, and delete columns.

transmute(<flowSet>): Create, modify, and delete columns.

ungroup(<flowSet>): Ungroup a flowSet

unnest(<flowSet>): Unnest a flowSet into a single flowFrame