Set panel information from a tof_tibble
Value
A `tof_tibble` containing information about the CyTOF panel that was used during data acquisition for the data contained in the input `tof_tibble`. Two columns are required: "metals" and "antigens".
See also
Other tof_tbl utilities:
new_tof_tibble(),
tof_get_panel()
Examples
# get current panel from an .fcs file
input_file <- dir(tidytof_example_data("aml"), full.names = TRUE)[[1]]
tof_tibble <- tof_read_data(input_file)
current_panel <- tof_get_panel(tof_tibble)
# create a new panel (remove empty channels)
new_panel <- dplyr::filter(current_panel, antigens != "empty")
tof_set_panel(tof_tibble = tof_tibble, panel = new_panel)
#> # A tibble: 100 × 59
#> Time Event_length `CD45|Y89` `empty|Pd102` `empty|Pd104` `empty|Pd105`
#> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
#> 1 11021370 16 517. 1.33 13.2 865.
#> 2 7112446. 19 850. 3.99 12.7 756.
#> 3 9722098 16 747. 6.96 4.85 639.
#> 4 2267279. 16 585. 0.648 6.32 586.
#> 5 9624729 18 773. 3.93 9.65 645.
#> 6 4439897 19 485. 4.18 3.84 627.
#> 7 2762526. 16 504. 3.46 4.25 566.
#> 8 3746682. 18 567. 6.62 11.7 703.
#> 9 15214280 19 1043. 3.10 9.20 853.
#> 10 42699. 16 543. 0.888 13.6 813.
#> # ℹ 90 more rows
#> # ℹ 53 more variables: `empty|Pd106` <dbl>, `empty|Pd108` <dbl>,
#> # `empty|Pd110` <dbl>, `CD61|In113` <dbl>, `CD99|In115` <dbl>,
#> # `empty|I127` <dbl>, `CD45RA|La139` <dbl>, `CD93|Ce140` <dbl>,
#> # `CD3_CD19|Pr141` <dbl>, `CCR2|Nd142` <dbl>, `CD117|Nd143` <dbl>,
#> # `CD123|Nd144` <dbl>, `CD64|Nd145` <dbl>, `CD90|Nd146` <dbl>,
#> # `CD38|Sm147` <dbl>, `CD34|Nd148` <dbl>, `CEBPa|Sm149` <dbl>, …